Protein ZmJMJ1
ZmJMJ1 is a protein in the JUMONJI family.
Information
Coreg Name: ZmJMJ1
Species: Maize
Coreg Family: JUMONJI
Gene Name(Synonym): JMJ1
Uniprot ID: A0A1D6PDQ1
Subgenome: 2

Protein ZmJMJ1

ZmJMJ1 is a protein in the JUMONJI family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF04724
Zm00001eb342220_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d009393DAPseq no logo sequence fimo position
Zm00001d009393DAPseq no logo sequence fimo position
Zm00001d009393ChIPseq no logo sequence fimo position
Zm00001d009393PChIPseq no logo sequence fimo position

Interactions where ZmJMJ1 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmJMJ1 is the target  
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There are 10 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb342220_T001 from maize genome v5

Amino Acid Sequence
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MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF04724
PF04724
PF04724
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Nucleotide Sequence
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AAGGAAGGTGACGTACTTTCTCCGG...

GRMZM2G142964_T01 from maize genome v3

Amino Acid Sequence
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MACRAKVVGQVERVDGESLSYAEFVRRFMAPNRPVVLTGLTSSWRAHKDWTLSGSGDLRRPNLGFFTQNFPSSLVQVDDC
SSSDFTDQKRLEMSMQEFIDHWVGGPHCGSSDGDRDGSLLYLKDWHFVKEPGLLCMLMFLGHTAGQQMFVGKNSGCFYHH
HKVIVYLIGT

Nucleotide Sequence
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CCCTACCAACTACACAGCCGCCGCC...

GRMZM2G142964_T02 from maize genome v3

Amino Acid Sequence
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MACRAKVVGQVERVDGESLSYAEFVRRFMAPNRPVVLTGLTSSWRAHKDWTLSGSGDLRRPNLGFFTQNFPSSLVQVDDC
SSSDFTDQKRLEMSMQEFIDHWVGGPHCGSSDGDRDGSLLYLKDWHFVKEPGLLCMLMFLGHTAGQQMFVGKNSGCFYHH
HKVIVYLIGT

Nucleotide Sequence
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CCCTACCAACTACACAGCCGCCGCC...

GRMZM2G142964_T03 from maize genome v3


Related TFome: pUT6289

Amino Acid Sequence
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MMFLKSSFLSLTEWLECIQEQNEIIFVPSGWYHQVHNLEDTISINHNWCNAYNLHWVWNLLYEDYKVAKEYIEDIRDICD
DFEGLCQRNLAANTGMNFYDFFVFIVRFALANVVELYHLQQPEVATLSTETAHHLVYNLMSIRNVASKMTTTEAFTTENR
LCSVSEDNRSAFSNIKQILEEESFRRLSMTLSKAYDHIDRGQRSLKSSISYRKGCSSVICLKSDCNVVDYITSLVDEICG
PEDLTRLIDSALSHG

Nucleotide Sequence
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CCCTACCAACTACACAGCCGCCGCC...

GRMZM2G142964_T04 from maize genome v3

Amino Acid Sequence
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MMFLKSSFLSLTEWLECIQEQNEIIFVPSGWYHQVHNLEDTISINHNWCNAYNLHWVWNLLYEDYKVAKEYIEDIRDICD
DFEGLCQRNLAANTGMNFYDFFVFIVRFALANVVELYHLQQPEVATLSTETAHHLVYNLMSIRNVASKMTTTEAFTTENR
LCSVSEDNRSAFSNIKQILEEESFRRLSMTLSKAYDHIDRGQRSLKSSISYRKGCSSVICLKSDCNVVDYITSLVDEICG
PEDLTRLIDSALSHG

Nucleotide Sequence
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CCCTACCAACTACACAGCCGCCGCC...

GRMZM2G142964_T05 from maize genome v3

Amino Acid Sequence
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MMFLKSSFLSLTEWLECIQEQNEIIFVPSGWYHQVHNLEDTISINHNWCNAYNLHWVWNLLYEDYKVAKEYIEDIRDICD
DFEGLCQRNLAANTGMNFYDFFVFIVRFALANVVELYHLQQPEVATLSTETAHHLVYNLMSIRNVASKMTTTEAFTTENR
LCSVSEDNRSAFSNIKQILEEESFRRLSMTLSKAYDHIDRGQRSLKSSISYRKGCSSVICLKSDCNVVDYITSLVDEICG
PEDLTRLIDSALSHG

Nucleotide Sequence
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CCCTACCAACTACACAGCCGCCGCC...

Zm00001d009393_T001 from maize genome v4

Amino Acid Sequence
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MENLCRLHGWMTGAGGRRCTGTGPERRGARTSGRRTRSSSPTADSAWHCSSFCFRRISDFAKTAWHWTVDHTGSCWGLVV
GVVGAHTRSTEATNESNSAWHYSSFCFRRISDFTKTAWHWMVDCTGSRWGLVVGAESGRTTESNPFAARAVRIHLRKVRD
SQAKACGIPYEKKKKRKRAQQATKPSTSLSTAAAGSGRATTAAAAAAPAQAGGSSAAPSST

Nucleotide Sequence
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AAGGAAGGTGACGTACTTTCTCCGG...


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